3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00942

Details:

PFam ID : PF00942

PFam Domain Description : Cellulose binding domain

Number of Sequence in 50% Dataset : 68

Number of Sequence in Full Dataset : 234

Average sequence length: 83.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00942	Q93LI9_9BACI_374_440	94.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00942	C7HD87_CLOTM_54_151	72

Sequence based PCA Plot of the family - PF00942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay