3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00941

Details:

PFam ID : PF00941

PFam Domain Description : FAD binding domain in molybdopterin dehydrogenase

Number of Sequence in 50% Dataset : 293

Number of Sequence in Full Dataset : 1881

Average sequence length: 175.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00941	B3M2Y5_DROAN_60_132	87.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00941	A6G0X9_9DELT_2_244	100

Sequence based PCA Plot of the family - PF00941 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=1 Length=8
Motif3 Start=26 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay