3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00940

Details:

PFam ID : PF00940

PFam Domain Description : DNA-dependent RNA polymerase

Number of Sequence in 50% Dataset : 110

Number of Sequence in Full Dataset : 317

Average sequence length: 378.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00940	O78798_PYLLI_483_816	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00940	Q8HD74_BRANA_531_1013	100

Sequence based PCA Plot of the family - PF00940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=63 Length=8
Motif2 Start=123 Length=8
Motif3 Start=11 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay