3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00936

Details:

PFam ID : PF00936

PFam Domain Description : BMC domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 1021

Average sequence length: 76.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00936	A1WFN7_VEREI_34_112	23.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00936	D9QZF2_CLOSW_1_87	99.7

Sequence based PCA Plot of the family - PF00936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=1 Length=8
Motif3 Start=18 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay