3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00933

Details:

PFam ID : PF00933

PFam Domain Description : Glycosyl hydrolase family 3 N terminal domain

Number of Sequence in 50% Dataset : 465

Number of Sequence in Full Dataset : 3629

Average sequence length: 292.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00933	O42827_DEBHN_1_94	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00933	D3ASQ2_9CLOT_101_225	99.9

Sequence based PCA Plot of the family - PF00933 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=99 Length=8
Motif3 Start=117 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay