3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00932

Details:

PFam ID : PF00932

PFam Domain Description : Lamin Tail Domain

Number of Sequence in 50% Dataset : 257

Number of Sequence in Full Dataset : 742

Average sequence length: 119.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00932	B8GI13_METPE_3_64	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00932	A4FI74_SACEN_34_105	100

Sequence based PCA Plot of the family - PF00932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=18
Motif2 Start=45 Length=8
Motif3 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay