3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00931

Details:

PFam ID : PF00931

PFam Domain Description : NB-ARC domain

Number of Sequence in 50% Dataset : 1421

Number of Sequence in Full Dataset : 6847

Average sequence length: 204.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00931	B8BJZ5_ORYSI_82_165	84.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00931	A5AKU5_VITVI_15_69	99.8

Sequence based PCA Plot of the family - PF00931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=99 Length=11
Motif2 Start=130 Length=8
Motif3 Start=45 Length=14
Motif4 Start=20 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay