3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00929

Details:

PFam ID : PF00929

PFam Domain Description : Exonuclease

Number of Sequence in 50% Dataset : 759

Number of Sequence in Full Dataset : 4706

Average sequence length: 159.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00929	B8AM28_ORYSI_17_115	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00929	Q00YG0_OSTTA_29_125	99.8

Sequence based PCA Plot of the family - PF00929 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=1 Length=8
Motif3 Start=35 Length=8
Motif4 Start=197 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay