3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00928

Details:

PFam ID : PF00928

PFam Domain Description : Adaptor complexes medium subunit family

Number of Sequence in 50% Dataset : 205

Number of Sequence in Full Dataset : 737

Average sequence length: 255.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00928	Q7ZTW0_DANRE_60_86	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00928	Q5DCF5_SCHJA_1_106	98.7

Sequence based PCA Plot of the family - PF00928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=8
Motif2 Start=174 Length=8
Motif3 Start=191 Length=8
Motif4 Start=419 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay