3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00927

Details:

PFam ID : PF00927

PFam Domain Description : Transglutaminase family, C-terminal ig like domain

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 258

Average sequence length: 100.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00927	Q3UV95_MOUSE_475_553	41.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00927	E5ST90_TRISP_515_605	69

Sequence based PCA Plot of the family - PF00927 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay