3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00926

Details:

PFam ID : PF00926

PFam Domain Description : 3,4-dihydroxy-2-butanone 4-phosphate synthase

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 1214

Average sequence length: 192.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00926	A3PWN0_MYCSJ_507_626	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00926	D8S2V6_SELML_7_231	100

Sequence based PCA Plot of the family - PF00926 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=35 Length=8
Motif3 Start=18 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay