3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00925

Details:

PFam ID : PF00925

PFam Domain Description : GTP cyclohydrolase II

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 1500

Average sequence length: 161.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00925	D6PDT9_9BACT_1_76	70.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00925	Q2GYW9_CHAGB_1_99	100

Sequence based PCA Plot of the family - PF00925 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=162 Length=11
Motif2 Start=9 Length=8
Motif3 Start=52 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay