3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00924

Details:

PFam ID : PF00924

PFam Domain Description : Mechanosensitive ion channel

Number of Sequence in 50% Dataset : 710

Number of Sequence in Full Dataset : 3964

Average sequence length: 198.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00924	C4JAM6_MAIZE_65_152	91.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00924	A0LC74_MAGSM_411_560	99.9

Sequence based PCA Plot of the family - PF00924 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=41 Length=8
Motif4 Start=10 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay