3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00923

Details:

PFam ID : PF00923

PFam Domain Description : Transaldolase

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 1637

Average sequence length: 256.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00923	Q5Y1B2_9ZZZZ_3_65	63.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00923	C7PWP8_CATAD_18_389	99.5

Sequence based PCA Plot of the family - PF00923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=57 Length=8
Motif3 Start=94 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay