3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00921

Details:

PFam ID : PF00921

PFam Domain Description : Borrelia lipoprotein

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 466

Average sequence length: 143.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00921	B5RP41_BORDL_248_322	31.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00921	B5RP49_BORDL_236_405	98.0

Sequence based PCA Plot of the family - PF00921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=30

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay