3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00920

Details:

PFam ID : PF00920

PFam Domain Description : Dehydratase family

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 1756

Average sequence length: 513.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00920	A4IPH4_GEOTN_65_520	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00920	A5B2S1_VITVI_259_458	100

Sequence based PCA Plot of the family - PF00920 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=35 Length=8
Motif2 Start=52 Length=17
Motif3 Start=1 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay