3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00919

Details:

PFam ID : PF00919

PFam Domain Description : Uncharacterized protein family UPF0004

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 2292

Average sequence length: 96.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00919	B3L7I7_PLAKH_213_414	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00919	C6M658_NEISI_105_158	100

Sequence based PCA Plot of the family - PF00919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=54 Length=8
Motif2 Start=1 Length=17
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay