3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00918

Details:

PFam ID : PF00918

PFam Domain Description : Gastrin/cholecystokinin family

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 61

Average sequence length: 107.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00918	ANTR_TRASC_1_52	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00918	E7FAX6_DANRE_2_117	100

Sequence based PCA Plot of the family - PF00918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay