3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00915

Details:

PFam ID : PF00915

PFam Domain Description : Calicivirus coat protein

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 289

Average sequence length: 134.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00915	B6V3E6_RHDV_28_152	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00915	Q66530_9CALI_219_514	95.4

Sequence based PCA Plot of the family - PF00915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=46 Length=8
Motif3 Start=11 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay