3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00913

Details:

PFam ID : PF00913

PFam Domain Description : Trypanosome variant surface glycoprotein (A-type)

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 165

Average sequence length: 319.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00913	Q9NK09_TRYBB_17_101	87.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00913	VSM5_TRYBB_7_365	100

Sequence based PCA Plot of the family - PF00913 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay