3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00912

Details:

PFam ID : PF00912

PFam Domain Description : Transglycosylase

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 3011

Average sequence length: 179.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00912	Q9L3B8_MYCSM_1_34	74.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00912	D6U4Y5_9CHLR_252_453	100

Sequence based PCA Plot of the family - PF00912 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay