3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00909

Details:

PFam ID : PF00909

PFam Domain Description : Ammonium Transporter Family

Number of Sequence in 50% Dataset : 266

Number of Sequence in Full Dataset : 2268

Average sequence length: 361.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00909	B2AF94_PODAN_235_318	86.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00909	D7FL37_ECTSI_357_439	100

Sequence based PCA Plot of the family - PF00909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=16 Length=17
Motif3 Start=49 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay