3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00908

Details:

PFam ID : PF00908

PFam Domain Description : dTDP-4-dehydrorhamnose 3,5-epimerase

Number of Sequence in 50% Dataset : 62

Number of Sequence in Full Dataset : 1363

Average sequence length: 171.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00908	A2DHU3_TRIVA_9_161	78.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00908	A7C3L5_9GAMM_6_190	100

Sequence based PCA Plot of the family - PF00908 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=44
Motif2 Start=129 Length=11
Motif3 Start=8 Length=23
Motif4 Start=95 Length=29

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay