3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00907

Details:

PFam ID : PF00907

PFam Domain Description : T-box

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 417

Average sequence length: 146.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00907	E3LWU5_CAERE_10_169	71.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00907	Q70TF6_SUBDO_42_247	100

Sequence based PCA Plot of the family - PF00907 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=38 Length=8
Motif2 Start=100 Length=8
Motif3 Start=154 Length=8
Motif4 Start=177 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay