3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00906

Details:

PFam ID : PF00906

PFam Domain Description : Hepatitis core antigen

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 156

Average sequence length: 110.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00906	A7I392_CAMHC_280_375	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00906	D8VC21_HBV_31_54	94.1

Sequence based PCA Plot of the family - PF00906 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=145 Length=8
Motif3 Start=174 Length=8
Motif4 Start=78 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay