3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00904

Details:

PFam ID : PF00904

PFam Domain Description : Involucrin repeat

Number of Sequence in 50% Dataset : 121

Number of Sequence in Full Dataset : 121

Average sequence length: 9.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00904	Q123A0_POLSJ_8_103	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00904	B4DWR5_HUMAN_210_219	69

Sequence based PCA Plot of the family - PF00904 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay