3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00899

Details:

PFam ID : PF00899

PFam Domain Description : ThiF family

Number of Sequence in 50% Dataset : 473

Number of Sequence in Full Dataset : 4005

Average sequence length: 133.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00899	C4Q4E4_SCHMA_682_760	76.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00899	E2LUE2_MONPE_69_153	99.9

Sequence based PCA Plot of the family - PF00899 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=17
Motif2 Start=29 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay