3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00898 Details: PFam ID : PF00898 PFam Domain Description : Orbivirus outer capsid protein VP2 Number of Sequence in 50% Dataset : 36 Number of Sequence in Full Dataset : 72 Average sequence length: 577.7 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00898A0PCN4_9REOV_17_95957.1 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF00898B5L4H4_AHSV6_1_268100 Sequence based PCA Plot of the family - PF00898 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=845 Length=8Motif2 Start=404 Length=8Motif3 Start=496 Length=8Motif4 Start=339 Length=11 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF00898
PFam Domain Description : Orbivirus outer capsid protein VP2
Number of Sequence in 50% Dataset : 36
Number of Sequence in Full Dataset : 72
Average sequence length: 577.7
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER