3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00895

Details:

PFam ID : PF00895

PFam Domain Description : ATP synthase protein 8

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 2367

Average sequence length: 52.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00895	C0ILU8_9NEOP_1_38	95.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00895	C7IW16_9PERC_1_56	93.7

Sequence based PCA Plot of the family - PF00895 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=8
Motif2 Start=1 Length=20
Motif3 Start=57 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay