3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00894

Details:

PFam ID : PF00894

PFam Domain Description : Luteovirus coat protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 38

Average sequence length: 117.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00894	C6RM55_ACIRA_1_50	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00894	O93184_PEMV1_52_188	100

Sequence based PCA Plot of the family - PF00894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay