3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00892

Details:

PFam ID : PF00892

PFam Domain Description : EamA-like transporter family

Number of Sequence in 50% Dataset : 5027

Number of Sequence in Full Dataset : 22839

Average sequence length: 124.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00892	E4VV93_BACFR_18_100	90.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00892	E5YAU1_BILWA_6_81	99.6

Sequence based PCA Plot of the family - PF00892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=108 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay