3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00890

Details:

PFam ID : PF00890

PFam Domain Description : FAD binding domain

Number of Sequence in 50% Dataset : 834

Number of Sequence in Full Dataset : 4342

Average sequence length: 357.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00890	F0HR20_9ACTN_7_234	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00890	A1T6I5_MYCVP_12_234	99.4

Sequence based PCA Plot of the family - PF00890 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=39 Length=8
Motif3 Start=1 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay