3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00889

Details:

PFam ID : PF00889

PFam Domain Description : Elongation factor TS

Number of Sequence in 50% Dataset : 171

Number of Sequence in Full Dataset : 1502

Average sequence length: 172.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00889	A7APN5_BABBO_94_331	81.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00889	A7ATN0_BABBO_302_394	100

Sequence based PCA Plot of the family - PF00889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=159 Length=8
Motif2 Start=90 Length=8
Motif3 Start=197 Length=11
Motif4 Start=17 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay