3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00888

Details:

PFam ID : PF00888

PFam Domain Description : Cullin family

Number of Sequence in 50% Dataset : 393

Number of Sequence in Full Dataset : 887

Average sequence length: 452.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00888	D0N4D6_PHYIT_509_643	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00888	B9NB23_POPTR_6_79	98.9

Sequence based PCA Plot of the family - PF00888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=648 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay