3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00885

Details:

PFam ID : PF00885

PFam Domain Description : 6,7-dimethyl-8-ribityllumazine synthase

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 1221

Average sequence length: 138.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00885	D9PZS0_ACIS3_1_126	82.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00885	D0NT81_PHYIT_16_171	100

Sequence based PCA Plot of the family - PF00885 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=48 Length=24
Motif3 Start=21 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay