3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00883

Details:

PFam ID : PF00883

PFam Domain Description : Cytosol aminopeptidase family, catalytic domain

Number of Sequence in 50% Dataset : 76

Number of Sequence in Full Dataset : 1372

Average sequence length: 298.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00883	C4WXQ4_ACYPI_1_118	54.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00883	A1BQL0_CUCSA_2_73	100

Sequence based PCA Plot of the family - PF00883 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=23 Length=18
Motif2 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay