3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00882

Details:

PFam ID : PF00882

PFam Domain Description : Zinc dependent phospholipase C

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 399

Average sequence length: 179.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00882	C1A8N1_GEMAT_19_216	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00882	C8W7U5_ATOPD_6_243	95.9

Sequence based PCA Plot of the family - PF00882 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay