3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00881

Details:

PFam ID : PF00881

PFam Domain Description : Nitroreductase family

Number of Sequence in 50% Dataset : 1068

Number of Sequence in Full Dataset : 5394

Average sequence length: 161.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00881	C2CSS3_CORST_11_50	74.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00881	C4Z8F2_EUBR3_13_83	99.8

Sequence based PCA Plot of the family - PF00881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=188 Length=8
Motif2 Start=77 Length=8
Motif3 Start=54 Length=8
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay