3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00880

Details:

PFam ID : PF00880

PFam Domain Description : Nebulin repeat

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 781

Average sequence length: 28.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00880	A7RI32_NEMVE_102_130	43.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00880	Q9DEH4_CHICK_185_213	98.7

Sequence based PCA Plot of the family - PF00880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay