3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00878

Details:

PFam ID : PF00878

PFam Domain Description : Cation-independent mannose-6-phosphate receptor repeat

Number of Sequence in 50% Dataset : 201

Number of Sequence in Full Dataset : 505

Average sequence length: 133.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00878	D2VDE7_NAEGR_81_191	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00878	A9URQ9_MONBE_23_153	100

Sequence based PCA Plot of the family - PF00878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=27 Length=8
Motif3 Start=18 Length=8
Motif4 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay