3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00877

Details:

PFam ID : PF00877

PFam Domain Description : NlpC/P60 family

Number of Sequence in 50% Dataset : 260

Number of Sequence in Full Dataset : 3068

Average sequence length: 106.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00877	Q6XL63_MOUSE_3_101	93.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00877	E3IWP2_FRASU_25_132	99.9

Sequence based PCA Plot of the family - PF00877 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=8
Motif2 Start=75 Length=8
Motif3 Start=62 Length=8
Motif4 Start=12 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay