3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00876

Details:

PFam ID : PF00876

PFam Domain Description : Innexin

Number of Sequence in 50% Dataset : 159

Number of Sequence in Full Dataset : 394

Average sequence length: 287.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00876	D3KVC6_9TREM_3_117	99.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00876	Q38HR8_HIRME_20_467	100

Sequence based PCA Plot of the family - PF00876 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=196 Length=8
Motif2 Start=26 Length=8
Motif3 Start=96 Length=8
Motif4 Start=111 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay