3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00875

Details:

PFam ID : PF00875

PFam Domain Description : DNA photolyase

Number of Sequence in 50% Dataset : 329

Number of Sequence in Full Dataset : 1505

Average sequence length: 161.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00875	E6ZTH9_9BASI_29_247	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00875	C2JKA5_ENTFA_3_80	99.9

Sequence based PCA Plot of the family - PF00875 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=15 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay