3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00873

Details:

PFam ID : PF00873

PFam Domain Description : AcrB/AcrD/AcrF family

Number of Sequence in 50% Dataset : 998

Number of Sequence in Full Dataset : 6079

Average sequence length: 874.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00873	F0GD38_9BURK_1_46	88.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00873	B9THF1_RICCO_1_78	100

Sequence based PCA Plot of the family - PF00873 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=53 Length=26
Motif3 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay