3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00872

Details:

PFam ID : PF00872

PFam Domain Description : Transposase, Mutator family

Number of Sequence in 50% Dataset : 363

Number of Sequence in Full Dataset : 1599

Average sequence length: 191.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00872	D0WII1_9ACTN_5_355	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00872	C4UPE3_YERRU_1_38	98.5

Sequence based PCA Plot of the family - PF00872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=8
Motif2 Start=20 Length=8
Motif3 Start=11 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay