3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00869

Details:

PFam ID : PF00869

PFam Domain Description : Flavivirus glycoprotein, immunoglobulin-like domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 109

Average sequence length: 199.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00869	Q8QVE1_9FLAV_285_590	68.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00869	B9TRQ0_9FLAV_286_591	100

Sequence based PCA Plot of the family - PF00869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=98 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay