3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00868

Details:

PFam ID : PF00868

PFam Domain Description : Transglutaminase family

Number of Sequence in 50% Dataset : 75

Number of Sequence in Full Dataset : 164

Average sequence length: 115.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00868	D2K8K8_ANOGA_26_173	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00868	D2K8K8_ANOGA_26_173	100

Sequence based PCA Plot of the family - PF00868 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=38 Length=8
Motif3 Start=131 Length=11
Motif4 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay