3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00867

Details:

PFam ID : PF00867

PFam Domain Description : XPG I-region

Number of Sequence in 50% Dataset : 106

Number of Sequence in Full Dataset : 762

Average sequence length: 88.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00867	B8C060_THAPS_190_236	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00867	F1A3K6_DICPU_138_231	100

Sequence based PCA Plot of the family - PF00867 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=28 Length=8
Motif2 Start=10 Length=17
Motif3 Start=89 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay