3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00859

Details:

PFam ID : PF00859

PFam Domain Description : CTF/NF-I family transcription modulation region

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 38

Average sequence length: 160.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00859	Q90929_CHICK_303_377	61.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00859	C3Y9T2_BRAFL_34_387	97.2

Sequence based PCA Plot of the family - PF00859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay