3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF00858

Details:

PFam ID : PF00858

PFam Domain Description : Amiloride-sensitive sodium channel

Number of Sequence in 50% Dataset : 476

Number of Sequence in Full Dataset : 980

Average sequence length: 333.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00858	E4XWF8_OIKDI_4_164	91.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF00858	E9IU98_SOLIN_6_78	99.2

Sequence based PCA Plot of the family - PF00858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=397 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay